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SRX1298658: Whole genome shotgun sequencing of Shigella sonnei by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 751,062 spots, 365.5M bases, 208.2Mb downloads

External Id: EXT00139685
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA
Study: FDA-CFSAN: microbial foodborne pathogen research
PRJNA243331 • SRP042343 • All experiments • All runs
show Abstracthide Abstract
Draft and complete genome sequences of foodborne bacterial pathogens collected for research purposes at the FDA's Center for Food Safety and Applied Nutrition.
Sample: Shigella sonnei Serotype group D str. CFSAN030807 cultured isolate
SAMN03612247 • SRS934836 • All experiments • All runs
Organism: Shigella sonnei
Library:
Name: Shigella sonnei Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Shigella sonnei.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 751,062 spots, 365.5M bases, 208.2Mb
Run# of Spots# of BasesSizePublished
SRR2544682751,062365.5M208.2Mb2015-10-15

ID:
1855287

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